Pandemic Data Science

Overview

Data science played a central role in the global response to the COVID-19 pandemic, enabling breakthroughs in everything from outbreak forecasting to vaccine development. This course explores the analytical tools, interdisciplinary collaborations, and real-world applications that allowed data scientists, epidemiologists, virologists, and policymakers to confront an unprecedented global crisis.

During Covid, mathematical modellers and data scientists joined virologists, public health professionals and policy makers to confront the pandemic using methods that did not exist for previous generations. And in recent years, the value of big-data has become increasingly appreciated across all sectors of industry, academia and society. It is clear that in the modern era data is an exceedingly valuable commodity and will be important in our preparedness for any future disease outbreaks.

Through a series of expert-led sessions, students will examine how data-driven approaches shaped key decisions during the pandemic—from modelling transmission dynamics to evaluating vaccine efficacy and identifying biomarkers of infection. The course also explores the broader systems that underpin pandemic preparedness, including One Health surveillance, genomic epidemiology, and public communication strategies.

Students will gain an appreciation for the power and limitations of data science in high-stakes environments, and develop insight into how these tools can—and must—be adapted for future infectious disease threats, including the elusive 'Disease X'. Real-world case studies, computational approaches, and cross-disciplinary perspectives will provide a comprehensive understanding of how data science continues to transform global health.

This course is part of the Oxford University Summer School for Adults (OUSSA) programme.

Programme details

Seminars

Participants are taught in small seminar groups of up to 10 students, and receive two one-on-one tutorials with their tutor.

Sunday

Seminar 1: Pandemic preparedness and identification of 'Disease X'

Seminar 2: Integrating One Health Data for Pandemic Prevention and Early Warning Systems

Monday

Seminar 3: Mathematical modelling and prediction of infectious disease epidemiology

Seminar 4: Data-Driven Public Communication and Misinformation Management in Infectious Disease Outbreaks

Tuesday

Seminar 5: Vaccine platform technologies and COVID-19 vaccine design

Seminar 6: Pandemic vaccine efficacy studies

Wednesday

Seminar 7: Viral sequencing and variants of concern identification

Seminar 8: Emerging threat of antimicrobial resistance

Thursday

Seminar 9: Genetic and non-genetic infectious disease risk factor identification

Seminar 10: Systems immunology and systems vaccinology

Friday

Seminar 11: Biomarker identification in infectious diseases

Seminar 12: Machine learning and artificial intelligence in the context of a pandemic

Programme timetable

The daily timetable will normally be as follows:

Saturday

14.00–16.30 - Registration

16.30–17.00 - Orientation meeting

17.00–17.30 - Classroom orientation for tutor and students

17.30–18.00 - Drinks reception

18.00–20.00 - Welcome dinner

Sunday – Friday

09.30–10.30 - Seminar

10.30–11.00 - Tea/coffee break

11.00–12.30 - Seminar

12.30–13.30 - Lunch

13.30–18.00 - Afternoons are free for tutorials, individual study, course-related field trips or exploring the many places of interest in and around Oxford.

18.00–19.00 - Dinner (there is a formal gala dinner every Friday to close each week of the programme).

A range of optional social events will be offered throughout the summer school. These are likely to include: a quiz night, visit to historic pubs in Oxford, visit to Christ Church for Evensong and after-dinner talks and discussions.

Certification

Certificate of Attendance

All participants who complete the course will receive a physical Certificate of Attendance.

Digital badge

You will also be issued with an official digital badge of attendance. After the course, you will receive an email with a link and instructions on how to download this. You will be able to share this on social media and add to your email signature if you wish to do so.

Academic credit

OUSSA is an accredited summer school taught at undergraduate level; each one-week course carries 10 CATS (Credit Accumulation and Transfer Scheme) points at FHEQ (Framework for Higher Education Qualification) Level 4.

CATS points will be awarded to students who attend all classes and complete the on-course assignment to the required standard. Please see the 'assessment methods' section below for more details.

Certificate of Higher Education

Credit (CATS points) earned from OUSSA can be transferred towards our flexible Certificate of Higher Education. This part-time, award-bearing course lets you decide what, how and where you study by gaining credit from short courses, including short online courses, in-person weekly classes and OUSSA.

For full details, including transfering credit gained from OUSSA to the programme, see our Certificate of Higher Education programme page.

 

Fees

Description Costs
Fee Option 1 (Single en suite - inc. Tuition and Meals) £2205.00
Fee Option 2 (Double en suite - inc. Tuition and Meals) 1 person £2310.00
Fee Option 3 (Twin en suite - inc. Tuition and Meals) per person £1850.00
Fee Option 4 (No Accommodation - inc. Tuition, Lunch & Dinner) £1375.00

Funding

Concessionary rates are available on a non-residential basis for those that qualify. 

The concessionary fee is for non-residential attendance only; participants will then be responsible for finding their own accommodation. See full details including eligibility.

Payment

All fees are charged on a per week, per person basis.

Please be aware that all payments made via non-UK credit/debit cards and bank accounts are subject to the exchange rate on the day they are processed.

Course change administration fee: Please note that course transfers may be permitted in exceptional circumstances; however, in accordance with our Terms and Conditions, an administration fee of £50 will be charged.

Payment terms

  • If enrolling online: full payment by credit/debit card at the time of booking
  • If submitting an application form: full payment online by credit/debit card or via bank transfer within 30 days of invoice date

Cancellations and refunds

Please see the terms and conditions for our open-access courses.

The Department cannot be held responsible for any costs you may incur in relation to travel or accommodation bookings as a result of a course cancellation, or if you are unable to attend the course for any other reason. You are advised to check the terms and conditions carefully and to purchase travel insurance.

Tutor

Prof Daniel O'Connor

Daniel is a University Research Lecturer within the Oxford Vaccine Group, University of Oxford. Daniel's research interests relate to the analysis of contemporary, high-dimensional datasets (e.g., genomic, transcriptomic, proteomic) to elucidate the molecular determinants of immune responses to vaccines and infectious diseases.

Course aims

This course aims to introduce students to the analytical approaches, successes and challenges experienced by the data science and artificial intelligence community during the COVID-19 pandemic. Students will gain experience of how data science has impacted key decisions and policy in response to the pandemic, from epidemiological modelling through to vaccination strategies.

Teaching methods

The teaching methods used during this course may include:

  • Short lectures/presentations
  • Physical handouts
  • Seminars/group discussions

Learning outcomes

By the end of this course, students will be expected to have:

  • Basic understanding of current pandemic preparedness strategies.
  • Familiarity with data science, machine learning & artificial intelligence.
  • Insights into the use of data science in infectious disease and vaccine research.

Assessment methods

Participants are required to undertake preparatory reading and complete a pre-course assignment of 1,500 words. Although this does not count towards credit, it is seen as an important way of developing your ideas and is mandatory. The pre-course assignment is typically due in the first week of June.

You will be assessed during the summer school by either a 1,000 word written assignment or a presentation supported by individual documentation. To successfully gain credit (10 CATS points) students should attend all classes and complete the on-course assignment.

Participants will attend two one-on-one tutorials with their tutor during the week.

Please see the 'certification' section for more details about CATS points.

Application

Most courses fill quickly so early registration is strongly recommended. If your preferred course is fully booked, you may wish to add yourself to the waiting list and the Programme Administrator will contact you should a place become available.

Please note, the programme is only open to those over the age of 18.

Online enrolment (single person accommodation and non-residential)

Single accommodation, double room for 1 person and non-residential places should be booked online by clicking on the 'Book now' button at the top of this page.

Online enrolments require payment in full at the time of registering.

Enrolment form (multi-occupancy or accessible accommodation)

Those requiring twin, double or accessible accommodation (including ground/lower floor accommodation) should complete an enrolment form as these rooms cannot be booked or requested online. 

Please send the completed enrolment form to the email address below. Both the PDF and Word option of the form below are editable, so you can complete them online before saving and sending to us as an email attachment. You do not need to print and scan them. (Please use these forms only if you are making a twin or double booking for two people.)

Those who have specific requirements (eg an accessible bedroom) should contact the Programme Administrator directly at oussa@conted.ox.ac.uk or OUSSA, University of Oxford Department for Continuing Education, 1 Wellington Square, OXFORD, OX1 2JA, UK.

Accommodation

Residential options are outlined below.

Please see the 'application' section above for guidance on how to book or request the right accommodation for you.

Residential option

This includes accommodation and all meals (breakfast, lunch and dinner). 

View full details of Rewley House accommodation.

Non-residential option

We also offer places on a non-residential basis whereby participants can take classes and have meals (lunch and dinner) at Rewley House, having arranged their own accommodation elsewhere.